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单分子宽场光学显微成像技术
Imaging of Single Molecules by Wide-Field Optical Microscopy
单分子宽场光学显微成像技术是单分子检测技术的一种,具有通量高、参数多样、可实时动态监测等优点。本文评述了单分子宽场光学显微成像的技术方法、标记探针、判定原则、检测参数及其在分析化学、生物物理学等领域的应用,指出单分子成像技术正在向仪器设备的实用化、简易化,测量参数的精确化、可视化,研究范围的广泛化、复杂化等方面发展。未来几年单分子成像的研究重点可能会集中在实用定量、突破衍射极限的距离测量、重要生物过程的机理探索和纳米目标物的表征等方面。
Among the techniques used for single molecule detection, wide-field optical microscopy offers the advantages of high throughput, multiple parameters and dynamic real-time monitoring. In the review, the wide-field optical microscopy apparatus, methods, detectable parameters, imaging probes, identifications criterion of single molecules, and applications in the fields of analytical and biophysics are summarized. Single molecule imaging is trending toward apparatus commercialization, operation simplicity, and process visualization with more accuracy in a wider and more complicated field. In the near future, the topics of single molecule detection will focus on quantitative analysis of biological sample, sub-diffraction-limit resolution, important biological mechanism, and characterization of nano-materials. Contents
1 Introduction
2 Apparatus for wide-field imaging
2.1 Epi-fluorescence microscope
2.2 Total internal reflection fluorescence microscope
2.3 Dark-field microscopy
3 Probes
3.1 Fluorescent probes
3.2 Scattering probes
4 Identification of single molecules and measurable parameters
4.1 Principles to identify single molecule
4.2 Parameters
5 Applications
5.1 Single-molecule quantification
5.2 Molecular behavior related to separation
5.3 Molecular interactions
5.4 Single molecule tracking
5.5 Single-molecule far-field nanoscopy
6 Outlook
单分子成像
single molecule imaging
[1] Nie S M, Emery S R P. Science, 1997, 275: 1102-1106
[2] Nie S M, Chiu D T, Zare R N. Science, 1994, 266: 1018-1021
[3] Weiss S. Science, 1999, 283: 1676-1683
[4] Nie S M, Zare R N. Annu. Rev. Biophys. Biomol. Struct., 1997, 26: 567-596
[5] Xie X S, Trautman J K. Annu. Rev. Phys. Chem., 1998, 49: 441-480
[6] Schutz G J, Sonnleitner M, Hinterdorfer P, Schindler H. Mol. Membr. Biol., 2000, 17: 17-29
[7] Selvin P R, Ha T. Single-Molecule Techniques: A Laboratory Mannual. New York: Cold Spring Harbor Laboratory Press, 2008
[8] Gell C, Brockwell D, Smith A. Handbook of Single Molecule Fluorescence Spectroscopy. Oxford University Press, 2006
[9] Gai H W, Stayton I, Liu X, Lin B C, Ma Y F. Trac-Trends Anal. Chem., 2007, 26: 980-992
[10] Schwille P. Cell Biochem. Biophy., 2001, 34: 383-408
[11] Hinterdorfer P, Dufrene Y F. Nat. Methods, 2006, 3: 347-355
[12] Qian X M, Nie S M. Chem. Soc. Rev., 2008, 37: 912-920
[13] Michalet X, Pinaud F F, Bentolila L A, Tsay J M, Doose S, Li J J, Sundaresan G, Wu A M, Gambhir S S, Weiss S. Science, 2005, 307: 538-544
[14] Pons T, Mattoussi H. Ann. Biomed. Eng., 2009, 37: 1934-1959
[15] Xie X S, Choi P J, Li G W, Lee N K, Lia G. Annu. Rev. Biophy., 2008, 37: 417-444
[16] 白春礼(Bai C L). 来自微观世界的新概念: 单分子科学与技术 (A New Concept From the Microscopic World: Single Molecule Science and Technology). 清华大学出版社(Tsinghua University Press), 2000
[17] 盖宏伟(Gai H W), 白吉玲(Bai J L), 林炳承(Lin B C). 分析化学(Chinese Journal of Analytical Chemistry), 2002. 30: 869-874
[18] 唐孝威(Tang X W), 罗建红(Luo J H), 章士正(Zhang S Z), 王彦广(Wang Y G). 分子影像与单分子检测技术 (Molecular Imaging and Single-Molecule Detection). 化学工业出版社(Chemical Industry Press), 2004
[19] Gai H W, Griess G A, Demeler B, Weintraub S T, Serwer P. J. Microscopy-Oxford, 2007, 226: 256-262
[20] Gerhardt I, Mai L J, Lamas-Linares A, Kurtsiefer C. Sensors, 2011, 11: 905-916
[21] Seisenberger G, Ried M U, Endress T, Buning H, Hallek M, Brauchle C. Science, 2001, 294: 1929-1932
[22] Han R, Zhang Y W, Dong X L, Gai H W, Yeung E S. Anal. Chim. Acta, 2008, 619: 209-214
[23] Li Q, Han R, Meng X X, Gai H W, Yeung E S. Anal. Biochem., 2008, 377: 176-181
[24] Axelrod D. Traffic, 2001, 2: 764-774
[25] Sako Y, Minoghchi S, Yanagida T. Nat. Cell Biol., 2000, 2: 168-172
[26] Ueda M, Sako Y, Tanaka T, Devreotes P, Yanagida T. Science, 2001, 294: 864-867
[27] Ichikawa T, Aoki T, Takeuchi Y, Yanagida T, Ide T. Langmuir, 2006, 22: 6302-6307
[28] Gai H W, Li Y, Silber-Li Z, Ma Y F, Lin, B C. Lab Chip, 2005, 5: 443-449
[29] Xiao L H, Wei L, He Y, Yeung E S. Anal. Chem., 2010, 82: 6308-6314
[30] Bu X B, Chen H P, Gai H W, Yang R H, Yeung E S. Anal. Chem., 2009, 81: 7507-7509
[31] Schutz G J, Kada G, Pastushenko V P, Schindler H. Embo J., 2000, 19: 892-901
[32] Kang S H, Yeung E S. Anal. Chem., 2002, 74: 6334-6339
[33] Ma Y F, Shortreed M R, Li H L, Huang W H, Yeung E S. Electrophoresis, 2001, 22: 421-426
[34] Douglass A D, Vale R D. Cell, 2005, 121: 937-950
[35] Harms G S, Cognet L, Lommerse P H M, Blab G A, Schmidt T. Biophys. Chem., 2001, 80: 2396-2408
[36] Goulian M, Simon S M. Biophys. Chem., 2000, 79: 2188-2198
[37] Grunwald D, Hoekstra A, Dange T, Buschmann V, Kubitscheck U. ChemPhysChem, 2006, 7: 812-815
[38] Dahan M, Levi S, Luccardini C, Rostaing P, Riveau B, Triller A. Science, 2003, 302: 442-445
[39] van Sark W, Frederix P, Bol A, Gerritsen H C, Meijerink A. ChemPhysChem, 2002, 3: 871-879
[40] Lee S F, Osborne M A. J. Am. Chem. Soc., 2007, 129: 8936-8937
[41] Hohng S, Ha T. J. Am. Chem. Soc., 2004, 126: 1324-1325
[42] Chen H P, Gai H W, Yeung E S. Chem. Commun., 2009, 1676-1678
[43] Shi X B, Meng X X, Sun L C, Liu J H, Zheng J, Gai H W, Yang R H, Yeung E S. Lab Chip, 2010, 10: 2844-2847
[44] Hu M, Novo C, Funston A, Wang H N, Staleva H, Zou S L, Mulvaney P, Xia Y N, Hartland G V. J. Mater. Chem., 2008, 18: 1949-1960
[45] Itoh T, Uwada T, Asahi T, Ozaki Y, Masuhara H. Can. J. Anal. Sci. Spectros., 2007, 52: 130-141
[46] Wang G F, Stender A S, Sun W, Fang N. Analyst, 2010, 135: 215-221
[47] Chen K H, Hobley J, Foo Y L, Su X D. Lab Chip, 2011, 11: 1895-1901
[48] Jin Y D, Gao X H. Nat. Nanotech., 2009, 4: 571-576
[49] Harms G S, Sonnleitner M, Schutz G J, Gruber H J, Schmidt T. Biophys. Chem., 1999, 77: 2864-2870
[50] Li N, Tang H, Gai H W, Dong X L, Wang Q, Yeung E S. Anal. Bioanal. Chem., 2009, 394: 1879-1885
[51] Li L, Tian X Z, Zou G Z, Shi Z K, Zhang X L, Jin W R. Anal. Chem., 2008, 80: 3999-4006
[52] Peterson E M, Harris J M. Anal. Chem., 2010, 82: 189-196
[53] Lee J Y, Li J W, Yeung E S. Anal. Chem., 2007, 79: 8083-8089
[54] Xue Q W, Jiang D F, Wang L, Jiang W. Bioconjugate Chem., 2010, 21: 1987-1993
[55] Jiang D F, Wang L, Jiang W. Anal. Chim. Acta, 2009, 634: 83-88
[56] Tessler L A, Reifenberger J G, Mitra R D. Anal. Chem., 2009, 81: 7141-7148
[57] Hesse J, Jacak J, Kasper M, Regl G, Eichberger T, Winklmayr M, Aberger F, Sonnleitner M, Schlapak R, Howorka S, Muresan L, Frischauf A M, Schutz G J. Genome Res., 2006, 16: 1041-1045
[58] Li L, Li X C, Li L, Wang J X, Jin W R. Anal. Chim. Acta, 2011, 685: 52-57
[59] Gai H W, Wang Q, Ma Y F, Lin B C. Angew. Chem. Int. Ed., 2005, 44: 5107-5110
[60] Xu X H N, Yeung E S. Science, 1998, 281: 1650-1653
[61] Fang N, Zhang H, Li J W, Li H W, Yeung E S. Anal. Chem., 2007, 79: 6047-6054
[62] Ma C B, Yeung E S. Anal. Chem., 2010, 82: 478-482
[63] Ma C B, Yeung E S. Anal. Chem., 2010, 82: 654-657
[64] Shortreed M R, Li H L, Huang W H, Yeung E S. Anal. Chem., 2000, 72: 2879-2885
[65] Zheng J J, Yeung E S. Anal. Chem., 2002, 74: 4536-4547
[66] Kang S H, Lee S, Yeung E S. Electrophoresis, 2006, 27: 4149-4157
[67] Hillisch A, Lorenz M, Diekmann S. Curr. Opin. Struc. Biol., 2011, 11: 201-207
[68] Svishchev G M. Opt. Spectros., 2004, 97: 204-209
[69] Ishijima A, Kojima H, Funatsu T, Tokunaga M, Higuchi H, Tanaka H, Yanagida T. Cell, 1998, 92: 161-171
[70] Hibino K, Shibata T, Yanagida T, Sako Y. Biophys. Chem., 2009, 97: 1277-1287
[71] Kaseda K, Yokota H, Ishii Y, Yanagida T, Inoue T, Fukui K, Kodama T. J. Bacteriol., 2000, 182: 1162-1166
[72] Herbert K M, Greenleaf W J, Block S M. Annu. Rev. Biochem., 2008, 77: 149-176
[73] Kitamura K, Tokunaga M, Iwane A H, Yanagida T. Nature, 1999, 397: 129-134
[75] Liu S X, Abbondanzieri E A, Rausch J W, Le Grice S F J, Zhuang X W. Science, 2008, 322: 1092-1097
[75] Lakadamyali M, Rust M J, Babcock H P, Zhuang X W. Proc. Natl. Acad. Sci. U. S. A., 2003, 100: 9280-9285
[76] Iino R, Koyama I, Kusumi A. Biophys. Chem., 2001, 80: 2667-2677
[77] Gao X H, Cui Y Y, Levenson R M, Chung L W K, Nie S M. Nat. Biotechnol., 2004, 22: 969-976
[78] Yu Q, Wang C, Liu L, Wang G Y. Chin. Optics Lett., 2005, 3: 256-258
[79] Kubitscheck U, Kuckmann O, Kues T, Peters R. Biophys. Chem., 2000, 78: 2170-2179
[80] Debrabander M, Nuydens R, Geerts H, Hopkins C R. Cell Motil. Cytoskel., 1988, 9: 30-47
[81] Kusumi A, Sako Y. Curr. Opin. Cell Biol., 1996, 8: 566-574
[82] Saxton M J, Jacobson K. Annu. Rev. Biophys. Biomol. Struct., 1997, 26: 373-399
[83] Ritchie K, Shan X Y, Kondo J, Iwasawa K, Fujiwara T, Kusumi A. Biophys. Chem., 2005, 88: 2266-2277
[84] Kues T, Peters R, Kubitscheck U. Biophys. Chem., 2001, 80: 2954-2967
[85] Siebrasse J P, Grunwald D, Kubitscheck U. Anal. Bioanal. Chem., 2007, 387: 41-44
[86] Courty S, Luccardini C, Bellaiche Y, Cappello G, Dahan M. Nano Lett., 2006, 6: 1491-1495
[87] Tada H, Higuchi H, Wanatabe T M, Ohuchi N. Cancer Res., 2007, 67: 1138-1144
[88] Hell S W. Science, 2007, 316: 1153-1158
[89] Hell S, Stelzer E H K. Opt. Commun., 1992, 93: 277-282
[90] Hofmann M, Eggeling C, Jakobs S, Hell S W. Proc. Natl. Acad. Sci. U. S. A., 2005, 102: 17565-17569
[91] Xiong Y, Liu Z, Sun C, Zhang X. Nano Lett., 2007, 7: 3360-3365
[92] Willig K I, Harke B, Medda R, Hell S W. Nat. Methods, 2007, 4: 915-918
[93] Betzig E, Patterson G H, Sougrat R, Lindwasser O W, Olenych S, Bonifacino J S, Davidson M W, Lippincott-Schwartz J, Hess H F. Science, 2006, 313: 1642-1645
[94] Rust M J, Bates M, Zhuang X W. Nat. Methods, 2006, 3: 793-795
[95] Bates M, Huang B, Dempsey G T, Zhuang X W. Science, 2007, 317: 1749-1753
[96] Thompson R E, Larson D R, Webb W W. Biophys. Chem., 2002, 82: 2775-2783
[97] Yildiz A, Forkey J N, McKinney S A, Ha T, Goldman Y E, Selvin P R. Science, 2003, 300: 2061-2065
[98] Gordon M P, Ha T, Selvin P R. Proc. Natl. Acad. Sci. U. S. A., 2004, 101: 6462-6465
[99] Agrawal A, Deo R, Wang G D, Wang M D, Nie S M. Proc. Natl. Acad. Sci. U. S. A., 2008, 105: 3298-3303
[100] Lacoste T D, Michalet X, Pinaud F, Chemla D S, Alivisatos A P, Weiss S. Proc. Natl. Acad. Sci. U. S. A., 2000, 97: 9461-9466
[101] Toprak E, Balci H, Blehm B H, Selvin P R. Nano Lett., 2007, 7: 2043-2045
[102] Holtzer L, Meckel T, Schmidt T. Appl. Phys. Lett., 2007, 90: art. no. 053902
[103] Huang B, Wang W Q, Bates M, Zhuang X W. Science, 2008, 319: 810-813
[104] Shi X B, Xie Z Q, Song Y H, Tan Y J, Yeung E S, Gai H W. Anal. Chem., 2012, 84: 1504-1509
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