中文 |
English |
Email Alert
金表面巯基化DNA单层性能的影响因素研究
Influence Factors on the Performance of DNA Self-Assembled Monolayers on Gold
巯基化DNA在金表面上吸附构建的自组装单层（self-assembled monolayers，SAMs）为DNA研究的理想异相体系，在DNA内电子传递的机制探讨、高灵敏DNA传感器设计以及DNA碱基错配点识别等方面有着广泛的应用。对于不同的研究对象应构建性能适合的DNA单层，以满足研究需要。为了可控构建DNA单层，应理解不同因素对金表面上DNA单层性能的影响。本文从金表面状况、DNA特性以及周围环境三个方面对金表面上巯基化DNA单层性能的影响因素研究进行了系统综述。
Thiol-modified DNA self-assembled monolayers (SAMs) on gold is the ideal heterogeneous system for studying DNA charge transfer through DNA duplex, designing DNA sensor with high sensitivity and identifying single base mismatch etc. The performance of DNA SAMs on gold is related to three aspects: gold surface conditions, DNA characteristics and surroundings. Gold surface conditions mainly include substrate configuration by different surface pretreatment, gold shapes, substrate potential and substrate temperature; DNA characteristics include the difference of double-stranded and single-stranded DNA, DNA base types, types for thiols modification and factors related to DNA electron transfer; Surroundings mainly include ionic strength or types of cations, ambient medium, temperature in solution and types of mixed thiols. These factors influence surface density and conformation of DNA SAMs on gold, which determine its charge transfer or hybridization performance. In order to controllably construct DNA SAMs with the optimal performance for satisfying different researches about DNA, it is very necessary to understand the effect of different factors on the performance of DNA SAMs on gold. In this article we review the research progress of influence factors on the performance of DNA SAMs on gold from three aspects including gold surface conditions, DNA characteristics and surroundings.
Contents
1 Introduction
2 Gold surface conditions
2.1 Surface pretreatment
2.2 Gold substrate shapes
2.3 Gold substrate potential
2.4 Gold substrate temperature
3 DNA characteristics
3.1 Double-stranded and single-stranded DNA
3.2 DNA base types
3.3 Types for thiols modification
3.4 Factors related to DNA electron transfer
4 Surroundings
4.1 Ionic strength and types of cations
4.2 Ambient medium
4.3 Temperature in solution
4.4 Types of mixed thiols
5 outlook
gold
[1] 雷丽红(Lei L H), 傅迎春(Fu Y C), 徐霞红 (Xu X H), 谢青季(Xie Q J), 姚守拙(Yao S Z). 化学进展(Progress in Chemistry), 2009, 21(4): 724.
[2] 李志果(Li Z G), 纪鸣(Ji M), 程炯佳(Cheng J J), 王新莹(Wang X Y), 陆晓杰(Lu X J), 安娜(An N), 毕树平(Bi S P). 分析科学学报(Journal of Analytical Science), 2012, 28(4): 567.
[3] 张炯(Zhang J), 万莹(Wan Y), 王丽华(Wang L H), 宋世平(Song S P), 樊春海(Fan C H). 化学进展(Progress in Chemistry), 2007, 19(10): 1576.
[4] Sontz P A, Muren N B, Barton J K. Acc. Chem. Res., 2012, 45: 1792.
[5] Teles F R R, Fonseca L P. Talanta, 2008, 77: 606.
[6] Muren N B, Olmona E D, Barton J K. Phys. Chem. Chem. Phys., 2012, 14: 13754.
[7] Olmon E D, Sontz P A, Blanco-Rodriguez A M, Towrie M, Clark I P, Vicek A Jr., Barton J K. J. Am. Chem. Soc., 2011, 133: 13718.
[8] Wohlgamuth C H, McWilliams M A, Slinker J D. Anal. Chem., 2013, 85: 1462.
[9] Mie Y, Kowata K, Kojima N, Komatsu Y. Langmuir, 2012, 28: 17211.
[10] Anne A, Demaille C. J. Am. Chem. Soc., 2008, 130: 9812.
[11] Wang K, Goyer C, Anne A, Demaille C. J. Phys. Chem. B, 2007, 111: 6051.
[12] Gong P, Levicky R. Proc. Natl. Acad. Sci. USA, 2008, 105: 5301.
[13] Arinaga K, Rant U, Knezevic J, Pringsheim E, Tornow M, Fujita S, Abstreiter G, Yokoyama N. Biosens. Bioelectron., 2007, 23: 326.
[14] 李志果(Li Z G), 戴建远(Dai J Y), 史艳青(Shi Y Q), 毕树平(Bi S P). 分析科学学报(Journal of Analytical Science), 2012, 28(2): 273.
[15] Feng G Y, Niu T X, You X Y, Wan Z W, Kong Q C, Bi S P. Analyst, 2011, 136: 5058.
[16] Tkac J, Davis J J. J. Electroanal. Chem., 2008, 621: 117.
[17] Carvalhal R F, Freire R S, Kubota L T. Electroanalysis, 2005, 17: 1251.
[18] Hoogvliet J C, Dijksma M, Kamp B, van Bennekom W P. Anal. Chem., 2000, 72: 2016.
[19] Thomas J P, Zhao L Y, Ding K J, Heinig N F, Leung K T. ACS Appl. Mater. Interfaces, 2012, 4: 5945.
[20] Li F, Han X P, Liu S F. Biosens. Bioelectron., 2011, 26: 2619.
[21] Liu S F, Liu J, Han X P, Cui Y N, Wang W. Biosens. Bioelectron., 2010, 25: 1640.
[22] Li Y, Qi H L, Yang J, Zhang C X. Microchim. Acta, 2009, 164: 69.
[23] Li A X, Yang F, Ma Y, Yang X R. Biosens. Bioelectron., 2007, 22: 1716.
[24] 王辉(Wang H), 李延(Li Y), 漆红兰(Qi H L), 张成孝(Zhang C X). 陕西师范大学学报(Journal of Shaanxi Normal University), 2006, 34(4): 69.
[25] 杨婕(Yang J), 杨涛(Yang T), 马瑶(Ma Y), 焦奎(Jiao K). 化学研究与应用(Chemical Research and Application), 2007, 19(3): 233.
[26] 董晓娅(Dong X Y), 赵伟伟(Zhao W W), 孙国宝(Sun G B), 徐静娟(Xu J J), 陈洪渊(Chen H Y). 化学学报(Acta Chimica Sinica), 2012, 70(13): 1457.
[27] Hansen A G, Salvatore P, Karlsen K K, Nichols R J, Wengel J, Ulstrup J. Phys. Chem. Chem. Phys., 2013, 15: 776.
[28] Salvatore P, Zeng D D, Karlsen K K, Chi Q J, Wengel J, Ulstrup J. ChemPhysChem, 2013, 14: 2101.
[29] Ohshiro T, Maeda M. Chem. Commun., 2010, 46: 2581.
[30] Ehlich R, Horber J K H. Ultramicroscopy, 2009, 109: 1074.
[31] 梁金玲(Liang J L), 周剑章(Zhou J Z), 陈巧琳(Chen Q L), 林玲玲(Lin L L), 林仲华(Lin Z H). 物理化学学报(Acta Physico-Chimica Sinica), 2007, 23(9): 1421.
[32] 王青(Wang Q), 王柯敏(Wang K M), 羊小海(Yang X H), 莫远尧(Mo Y Y), 黄杉生(Huang S S), 李杜(Li D). 湖南大学学报(Journal of Hunan University), 2003, 30(1): 1.
[33] 董丽琴(Dong L Q), 周剑章(Zhou J Z), 吴玲玲(Wu L L), 董平(Dong P), 林仲华(Lin Z H). 高等学校化学学报(Chemical Journal of Chinese Universities), 2002, 23(12): 2303.
[34] Yang X H, Wang Q, Wang K M, Tan W H, Yao J, Li H M. Langmuir, 2006, 22: 5654.
[35] Rant U, Arinaga K, Fujita S, Yokoyama N, Abstreiter G, Tornow M. Nano Lett., 2004, 4: 2441.
[36] Kaiser W, Rant U. J. Am. Chem. Soc., 2010, 132: 7935.
[37] Rant U, Arinaga K, Tornow M, Kim Y W, Netz R R, Fujita S, Yokoyama N, Abstreiter G. Biophys. J., 2006, 90: 3666.
[38] Rant U, Arinaga K, Fujita S, Yokoyama N, Abstreiter G, Tornow M. Org. Biomol. Chem., 2006, 4: 3448.
[39] Josephs E A, Ye T. Nano Lett., 2012, 12: 5255.
[40] Ceres D M, Barton J K. J. Am. Chem. Soc., 2003, 125: 14964.
[41] Josephs E A, Ye T. J. Am. Chem. Soc., 2012, 134: 10021.
[42] Kelley S O, Barton J K, Jackson N M, McPherson L D, Potter A B, Spain E M, Allen M J, Hill M G. Langmuir, 1998, 14: 6781.
[43] Heaton R J, Peterson A W, Georgiadis R M. Proc. Natl. Acad. Sci. USA, 2001, 98: 3701.
[44] Rant U, Pringsheim E, Kaiser W, Arinaga K, Knezevic J, Tornow M, Fujita S, Yokoyama N, Abstreiter G. Nano Lett., 2009, 9: 1290.
[45] Rant U, Arinaga K, Scherer S, Pringsheim E, Fujita S, Yokoyama N, Tornow M, Abstreiter G. Proc. Natl. Acad. Sci. USA, 2007, 104: 17364.
[46] Arinaga K, Rant U, Tornow M, Fujita S, Abstreiter G, Yokoyama N. Langmuir, 2006, 22: 5560.
[47] Wong I Y, Melosh N A. Nano Lett., 2009, 9: 3521.
[48] Cao S H, Xie T T, Cai W P, Liu Q, Li Y Q. J. Am. Chem. Soc., 2011, 133: 1787.
[49] Johnson R P, Gale N, Richardson J A, Brown T, Bartlett P N. Chem. Sci., 2013, 4: 1625.
[50] Johnson R P, Gao R, Brown T, Bartlett P N. Bioelectrochemistry, 2012, 85: 7.
[51] Flechsig G U, Peter J, Hartwich G, Wang J, Grundler P. Langmuir, 2005, 21: 7848.
[52] Peter J, Reske T, Flechsig G U. Electroanalysis, 2007, 19: 1356.
[53] Walter A, Surkus A E, Flechsig G U. Anal. Bioanal. Chem., 2013, 405: 3907.
[54] Li Z G, Niu T X, Zhang Z J, Chen R, Feng G Y, Bi S P. Analyst, 2011, 136: 2090.
[55] Li Z G, Niu T X, Zhang Z J, Chen R, Feng G Y, Bi S P. Biosens. Bioelectron., 2011, 26: 4564.
[56] Tinland B, Pluen A, Sturm J, Weill G. Macromolecules, 1997, 30: 5763.
[57] Steel A B, Levicky R L, Herne T M, Tarlov M J. Biophys. J., 2000, 79: 975.
[58] Petrovykh D Y, Perez-Dieste V, Opdahl A, Kimura-Suda H, Sullivan J M, Tarlov M J, Himpsel F J, Whitman L J. J. Am. Chem. Soc., 2006, 128: 2.
[59] Barhoumi A, Zhang D M, Halas N J. J. Am. Chem. Soc., 2008, 130: 14040.
[60] Yao L Q, Sullivan J, Hower J, He Y, Jiang S Y. J. Chem. Phys., 2007, 127: 195101.
[61] Petrovykh D Y, Kimura-Suda H, Whitman L J, Tarlov M J. J. Am. Chem. Soc., 2003, 17: 5219.
[62] Mourougou-Candoni N, Naud C, Thibaudau F. Langmuir, 2003, 19: 682.
[63] Cardenas M, Barauskas J, Schillen K, Brennan J L, Brust M, Nylander T. Langmuir, 2006, 22: 3294.
[64] Wolf L K, Gao Y, Georgiadis R M. Langmuir, 2004, 20: 3357.
[65] Kimura-Suda H, Petrovykh D Y, Tarlov M J, Whitman L J. J. Am. Chem. Soc., 2003, 125: 9014.
[66] Sam M, Boon E M, Barton J K, Hill M G, Spain E M. Langmuir, 2001, 17: 5727.
[67] Farjami E, Campos R, Ferapontova E E. Langmuir, 2012, 28: 16218.
[68] Sakata T, Maruyama S, Ueda A, Otsuka H, Miyahara Y. Langmuir, 2007, 23: 2269.
[69] Day B S, Fiegland L R, Vint E S, Shen W Q, Morris J R, Norton M L. Langmuir, 2011, 27: 12434.
[70] O'Brien J C, Stickney J T, Porter M D. J. Am. Chem. Soc., 2000, 122: 5004.
[71] Ceres D M, Udit A K, Hill H D, Hill M G, Barton J K. J. Phys. Chem. B, 2007, 111: 663.
[72] Pheeney C G, Barton J K. J. Am. Chem. Soc., 2013, 135: 14944.
[73] Genereux J G, Barton J K. Chem. Rev., 2010, 110: 1642.
[74] Gorodetsky A A, Green O, Yavin E, Barton J K. Bioconjuate Chem., 2007, 18: 1434.
[75] Liu B, Bard A J, Li C Z, Kraatz H B. J. Phys. Chem. B, 2005, 109: 5193.
[76] Abi A, Ferapontova E E. J. Am. Chem. Soc., 2012, 134: 14499.
[77] Mie Y, Kojima N, Kowata K, Komatsu Y. Chem. Lett., 2012, 41: 62.
[78] Yu Y M, Heidel B, Parapugna T L, Wenderhold-Reeb S, Song B, Schçnherr H, Grininger M, Noll G. Angew. Chem. Int. Ed., 2013, 52: 4950.
[79] Farjami E, Clima L, Gothelf K V, Ferapontova E E. Analyst, 2010, 135: 1443.
[80] Wohlgamuth C H, McWilliams M A, Slinker J D. Anal. Chem., 2013, 85: 8634.
[81] Guo Q Q, Yue Q L, Zhao J J, Wang L, Wang H S, Wei X L, Liu J F, Jia J B. Chem. Commun., 2011, 47: 11906.
[82] Boon E M, Jackson N M, Wightman M D, Kelley S O, Hill M G, Barton J K. J. Phys. Chem. B, 2003, 107: 11805.
[83] Inouye M, Ikeda R, Takase M, Tsuri T, Chiba J. Proc. Natl. Acad. Sci. USA, 2005, 102: 11606.
[84] Slinker J D, Muren N B, Renfrew S E, Barton J K. Nat. Chem., 2011, 3: 228.
[85] Drummond T G, Hill M G, Barton J K. J. Am. Chem. Soc., 2004, 126: 15010.
[86] Liu T, Barton J K. J. Am. Chem. Soc., 2005, 127: 10160.
[87] Göhler B, Hamelbeck V, Markus T Z, Kettner M, Hanne G F, Vager Z, Naaman R, Zacharias H. Science, 2011, 331: 894.
[88] 陈霞(Chen X), 杨文胜(Yang W S), 靳健(Jin J), 徐力(Xu L), 杨百全(Yang B Q), 江林(Jiang L), 李铁津(Li T J), 陈曦(Chen X). 高等学校化学学报(Chemical Journal of Chinese Universities), 2001, 22(7): 1228.
[89] 李安之(Li A Z), 丁玫(Ding M), 于海鹰(Yu H Y), 章江英(Zhang J Y). 物理化学学报(Acta Physico-Chimica Sinica), 1992, 8(2): 207.
[90] 沈鹤柏(Shen H B), 康玉专(Kang Y Z), 杨海峰(Yang H F), 郁林(Yu L), 章宗穰(Zhang Z R). 电化学(Electrochemistry), 1998, 11(4): 400.
[91] 王新莹(Wang X Y), 纪鸣(Ji M), 李志果(Li Z G), 陆晓杰(Lu X J), 程炯佳(Cheng J J), 毕树平(Bi S P). 分析科学学报(Journal of Analytical Science), 2005, 21(5): 557.
[92] Castelino K, Kannan B, Majumdar A. Langmuir, 2005, 21: 1956.
[93] 徐 颖(Xu Y), 杨 琳(Yang L), 叶晓燕(Ye X Y), 何品刚(He P G), 方禹之(Fang Y Z). 华东师范大学学报(Journal of East China Normal University), 2006, 4: 39.
[94] Stachowiak J C, Yue M, Castelino K, Chakraborty A, Majumdar A. Langmuir, 2006, 22: 263.
[95] Li Z G, Niu T X, Zhang Z J, Feng G Y, Bi S P. Analyst, 2012, 137: 1680.
[96] Asanuma H, Noguchi H, Uosaki K, Yu H Z. J. Am. Chem. Soc., 2008, 130: 8016.
[97] Dinsmore M J, Lee J S. J. Inorg. Biochem., 2008, 102: 1599.
[98] Long Y T, Li C Z, Kraatz H B, Lee J S. Biophys. J., 2003, 84: 3218.
[99] Dinsmore M J, Lee J S. J. Electroanal. Chem., 2008, 617: 71.
[100] Li C Z, Long Y T, Kraatz H B, Lee J S. J. Phys. Chem. B, 2003, 107: 2291.
[101] Mizoguchi K, Tanaka S, Ogawa T, Shiobara N, Sakamoto H. Phys. Rev. B, 2005, 72: 033106.
[102] Legay G, Finot E, Meunier-Prest R, Cherkaoui-Malki M, Latruffe N, Dereux A. Biosens. Bioelectron., 2005, 21: 627.
[103] Howell C, Schmidt R, Kurz V, Koelsch P. Biointerphases, 2008, 3: 47.
[104] Yang W W, Lai R Y. Analyst, 2011, 136: 134.
[105] Pris A D, Ostrowski S G, Garaas S D. Langmuir, 2010, 26: 5655.
[106] Ge D B, Wang X, Williams K, Levicky R. Langmuir, 2012, 28: 8446.
[107] Kjallman T H M, Peng H, Soeller C, Travas-Sejdic J. Anal. Chem., 2008, 80: 9460.
[108] Goda T, Miyahara Y. Biosens. Bioelectron., 2011, 26: 3949.
[109] Mix M, Reske T, Duwensee H, Flechsig G U. Electroanalysis, 2009, 21: 826.
[110] 白燕(Bai Y), 戴小锋(Dai X F), 刘仲明(Liu Z M), 刘芳(Liu F), 马丽(Ma L). 传感器技术(Journal of Transducer Technology), 2005, 24(6): 23.
[111] Pheeney C G, Guerra L F, Barton J K. Proc. Natl. Acad. Sci. USA, 2012, 109: 11528.
[112] Herne T M, Tarlov M J. J. Am. Chem. Soc., 1997, 119: 8916.
[113] Dharuman V, Chang B Y, Park S M, Hahn J H. Biosens. Bioelectron., 2010, 25: 2129.
[114] Wu J, Campuzano S, Halford C, Haake D A, Wang J. Anal. Chem., 2010, 82: 8830.
[115] Zhang J, Lao R J, Song S P, Yan Z Y, Fan C H. Anal. Chem., 2008, 80: 9029.
[116] Dharuman V, Vijayaraj K, Radhakrishnan S, Dinakaran T, Narayanan J S, Bhuvana M, Wilson J. Electrochim. Acta, 2011, 56: 8147.
[117] Campuzano S, Kuralay F, Jesús Lobo-Castanón M, Bartosík M, Vyavahare K, Palecek E, Haake D A, Wang J. Biosens. Bioelectron., 2011, 26: 3577.
[118] Gebala M, Schuhmann W. ChemPhysChem, 2010, 11: 2887.
[119] Ferrario A, Scaramuzza M, Pasqualotto E, De Toni A, Paccagnella A. J. Electroanal. Chem., 2013, 689: 57.
[120] Kuralay F, Campuzano S, Wang J. Talanta, 2012, 99: 155.
[121] Henrya O Y F, Gutierrrez Pereza J, Sancheza J L A, O'Sullivan C K. Biosens. Bioelectron., 2010, 25: 978.
[122] Vikholm-Lundin I, Piskonen R. Sens. Actuators B, 2008, 134: 189.
[123] Satjapipat M, Sanedrin R, Zhou F M. Langmuir, 2001, 17: 7637.
[124] Abel G R, Josephs E A, Luong N, Ye T. J. Am. Chem. Soc., 2013, 135: 6399.
[125] Josephs E A, Ye T. ACS Nano, 2013, 7: 3653.
[126] Lou X H, Zhao T, Liu R, Ma J, Xiao Y. Anal. Chem., 2013, 85: 7574.
/
| 〈 |
|
〉 |
PDF
(3366KB)
