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Phosphorylated membrane proteome analysis of human neuroblastoma SH-SY5Y cell line

HOU Chunyan, MA Junfeng, TAO Dingyin, ZHANG Lihua, LIANG Zhen, ZHANG Yukui

Progress in Chemistry ››

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Progress in Chemistry ›› DOI: 10.3724/SP.J.1123.2011.00851
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Phosphorylated membrane proteome analysis of human neuroblastoma SH-SY5Y cell line
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Abstract

A strategy with the combination of multiprotease digestion and the selective enrichment of phosphopeptides by silica hybrid monolith based immobilized Ti4+ affinity chromatography(Ti4+-IMAC)was proposed,and applied in the global profiling of phosphorylated membrane proteome of neuroblastoma SH-SY5Y cells. The fraction of membrane proteins was extracted by ultra speed centrifuge,followed by wash-lng with 1 mol/L sodium chloride and 0.1 mol/L sodium carbonate. For digestion,chymotrypsin and pepsin with broader specificity were used as complementary enzymes to trypsin. The phosphopeptides were then selectively enriched by monolithic Ti4+-IMAC column,and analyzed by nanoflow high performance liquid chromatography and mass spectrometry. A total of 43 phosphoproteins were identified,among which 14 proteins were located on the membrane. All these results demonstrated that the proposed strategy might be promising to promote the in-depth study of neuroblastoma and discover the candidate biomarkers.

Keywords

human neuroblastoma / phosphopeptide enrichment / membrane protein / multienzyme digestion / immobilized Ti4+ affinity chromatography / organic-inorganic hybrid silica monolith

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HOU Chunyan, MA Junfeng, TAO Dingyin, ZHANG Lihua, LIANG Zhen, ZHANG Yukui. Phosphorylated membrane proteome analysis of human neuroblastoma SH-SY5Y cell line. Progress in Chemistry DOI:10.3724/SP.J.1123.2011.00851

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